Trans-eQTLs across different cancer types
In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
Gene symbol
|
Gene position (hg19)
|
p-valule
|
|||
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs6006462 | chr22:44344776 | A/C | DUSP18 | chr22:31048038-31063877:- | -0.6 | -7.63 | 1.33E-13 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | EIF3D | chr22:36906897-36925483:- | -0.75 | -9.79 | 9.58E-21 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | EIF3L | chr22:38244875-38285414:+ | -0.77 | -8.86 | 1.62E-17 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | EIF4ENIF1 | chr22:31832963-31892094:- | -0.98 | -11.72 | 4.72E-28 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | EP300 | chr22:41487790-41576083:+ | -0.57 | -9.37 | 2.85E-19 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | EWSR1 | chr22:29663998-29696515:+ | -0.59 | -6.7 | 5.8E-11 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | FAM10A4 | chr13:50746154-50747749:+ | -0.78 | -9.73 | 1.49E-20 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | FAM116B | chr22:50750392-50765489:- | -0.57 | -7.15 | 3.17E-12 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | FBXO7 | chr22:32870663-32894816:+ | -0.61 | -8.17 | 2.83E-15 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | FOXRED2 | chr22:36883237-36903148:- | -0.63 | -6.99 | 9.54E-12 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | GATSL3 | chr22:30681106-30685616:- | -0.58 | -6.28 | 7.48E-10 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | GGA1 | chr22:38004482-38029571:+ | -0.88 | -11.3 | 2.11E-26 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | GRAMD4 | chr22:46971909-47075687:+ | -0.82 | -8.47 | 3.14E-16 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | GTPBP1 | chr22:39101728-39134304:+ | -0.74 | -9.31 | 4.47E-19 | Box Plot |
| THCA | rs6006462 | chr22:44344776 | A/C | HDAC10 | chr22:50683612-50689834:- | -0.56 | -7.7 | 7.7E-14 | Box Plot |